PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0537s00020.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 383aa    MW: 41659.9 Da    PI: 10.0407
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0537s00020.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.76.2e-14172216347
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       +WT+eE+ l++ + ++ G+g+W+ I+r + k+Rt+ q+ s+ qky
  Vang0537s00020.1 172 PWTEEEHRLFLLGLHKVGKGDWRGISRNFVKTRTPTQVASHAQKY 216
                       8*******************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.6318499IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129418.554165221IPR017930Myb domain
SuperFamilySSF466891.15E-16167220IPR009057Homeodomain-like
TIGRFAMsTIGR015571.9E-16168219IPR006447Myb domain, plants
SMARTSM007171.2E-10169219IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-10171216IPR009057Homeodomain-like
PfamPF002493.2E-11172216IPR001005SANT/Myb domain
CDDcd001671.68E-9172217No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0046686Biological Processresponse to cadmium ion
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
HKHQCHHHTF NTSTLPKQNS LYITQTSLCL FLSLHHKHKP NNTLSSFKPF ISSPYIITSI  60
NLPHTYHIHI AIFIAWTVEM SRTCSQCGNN GHNSRTCTDG GAAVSGGSSP RESGFMLFGV  120
RVTEGISSFR KSASMNNLSQ YDADSNTADA GYASDDVVHA SGRARERKRG VPWTEEEHRL  180
FLLGLHKVGK GDWRGISRNF VKTRTPTQVA SHAQKYFLRR HNQNRRRRRS SLFDITTDTV  240
MESSTIMEEE QVQQETAALP IPAAYPPSHY GGLPGAGFPM SLSPVVLPAS SERLAKPIRP  300
TPILPVPPSS KMASLNLKEK ASPTNLIEPL PLSLNLPSPT PRSQDQSPAS SDHSSPSSSS  360
SAFQVISAGK FGGGGDSIIS VA*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00630PBMTransfer from PK17526.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014490537.10.0PREDICTED: transcription factor MYB1R1
SwissprotQ2V9B09e-49MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBLA0A0S3T2U30.0A0A0S3T2U3_PHAAN; Uncharacterized protein
STRINGGLYMA02G03020.11e-157(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53383350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G70000.23e-77MYB_related family protein